PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025845m
Common NameEUTSA_v10025845mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family SRS
Protein Properties Length: 300aa    MW: 32443.4 Da    PI: 6.3376
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025845mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.63.8e-69802282154
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 
                      rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++      + ++ +kr+r+        +ss++l+s +
  Thhalv10025845m  80 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTYGGGDGSGSSVPKRHRDI-----PGTSSSRLPSDS 168
                      67899***********************************************************9**********97.....566778999999 PP

           DUF702  96 skkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                      +  e+e +s+P+evss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
  Thhalv10025845m 169 TGLEMEEASFPPEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 228
                      9*****************************8899************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.7E-6283227IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.9E-2785127IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.1E-28178226IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSGIFSLGGN NNNNGEEEEE ENQQQQKTNW VWYRNTNPSS SLWQIPPEQQ MLMHHHPQQQ  60
SLDLYPGHQI DISDLATSSR SITISCRDCG NQAKKDCTHM RCRTCCKSRG FDCSTHVRST  120
WIPVARRRER QQQLHMSTYG GGDGSGSSVP KRHRDIPGTS SSRLPSDSTG LEMEEASFPP  180
EVSSDALFRC VKMSGVDDGG DGQYAYQTTV NIGGHLFKGI LYDQGPESSY ISGNSGGSDH  240
QSSSAGGGNP FKAMADGGGG GGGSSAMFVD PNSGGYYSSN MTTMFVPPGT QFYQNPPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052650.0GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412014.10.0hypothetical protein EUTSA_v10025845mg
SwissprotO655171e-141SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLV4ME110.0V4ME11_EUTSA; Uncharacterized protein
STRINGBra017754.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-125Lateral root primordium (LRP) protein-related